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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
1. Breast Discovery Screen
Transcript map
: ABCG2
Exon
Length: 80
Transcript: ABCG2.aAug05
Length: 80
Transcript: ABCG2.aAug05
Exon
Length: 222
Transcript: ABCG2.aAug05
Length: 222
Transcript: ABCG2.aAug05
Exon
Length: 60
Transcript: ABCG2.aAug05
Length: 60
Transcript: ABCG2.aAug05
Exon
Length: 115
Transcript: ABCG2.aAug05
Length: 115
Transcript: ABCG2.aAug05
Exon
Length: 153
Transcript: ABCG2.aAug05
Length: 153
Transcript: ABCG2.aAug05
Exon
Length: 158
Transcript: ABCG2.aAug05
Length: 158
Transcript: ABCG2.aAug05
Exon
Length: 152
Transcript: ABCG2.aAug05
Length: 152
Transcript: ABCG2.aAug05
Exon
Length: 102
Transcript: ABCG2.aAug05
Length: 102
Transcript: ABCG2.aAug05
Exon
Length: 245
Transcript: ABCG2.aAug05
Length: 245
Transcript: ABCG2.aAug05
Exon
Length: 83
Transcript: ABCG2.aAug05
Length: 83
Transcript: ABCG2.aAug05
Exon
Length: 90
Transcript: ABCG2.aAug05
Length: 90
Transcript: ABCG2.aAug05
Exon
Length: 125
Transcript: ABCG2.aAug05
Length: 125
Transcript: ABCG2.aAug05
Exon
Length: 155
Transcript: ABCG2.aAug05
Length: 155
Transcript: ABCG2.aAug05
Exon
Length: 90
Transcript: ABCG2.aAug05
Length: 90
Transcript: ABCG2.aAug05
Exon
Length: 83
Transcript: ABCG2.aAug05
Length: 83
Transcript: ABCG2.aAug05
Exon
Length: 575
Transcript: ABCG2.aAug05
Length: 575
Transcript: ABCG2.aAug05
Intron
Length: 19190
Transcript: ABCG2.aAug05
Length: 19190
Transcript: ABCG2.aAug05
Intron
Length: 7157
Transcript: ABCG2.aAug05
Length: 7157
Transcript: ABCG2.aAug05
Intron
Length: 658
Transcript: ABCG2.aAug05
Length: 658
Transcript: ABCG2.aAug05
Intron
Length: 589
Transcript: ABCG2.aAug05
Length: 589
Transcript: ABCG2.aAug05
Intron
Length: 9268
Transcript: ABCG2.aAug05
Length: 9268
Transcript: ABCG2.aAug05
Intron
Length: 3374
Transcript: ABCG2.aAug05
Length: 3374
Transcript: ABCG2.aAug05
Intron
Length: 3050
Transcript: ABCG2.aAug05
Length: 3050
Transcript: ABCG2.aAug05
Intron
Length: 1409
Transcript: ABCG2.aAug05
Length: 1409
Transcript: ABCG2.aAug05
Intron
Length: 6036
Transcript: ABCG2.aAug05
Length: 6036
Transcript: ABCG2.aAug05
Intron
Length: 5864
Transcript: ABCG2.aAug05
Length: 5864
Transcript: ABCG2.aAug05
Intron
Length: 1781
Transcript: ABCG2.aAug05
Length: 1781
Transcript: ABCG2.aAug05
Intron
Length: 1716
Transcript: ABCG2.aAug05
Length: 1716
Transcript: ABCG2.aAug05
Intron
Length: 1843
Transcript: ABCG2.aAug05
Length: 1843
Transcript: ABCG2.aAug05
Intron
Length: 860
Transcript: ABCG2.aAug05
Length: 860
Transcript: ABCG2.aAug05
Intron
Length: 2195
Transcript: ABCG2.aAug05
Length: 2195
Transcript: ABCG2.aAug05
Reaction
Expected peak: 149
Associated peak: 149,163,164
Repeated 4 time
Molarity: 61.97M
Forward: ABCG2.F3
Reverse: ABCG2.R3
Expected peak: 149
Associated peak: 149,163,164
Repeated 4 time
Molarity: 61.97M
Forward: ABCG2.F3
Reverse: ABCG2.R3
Reaction
Expected peak: 204
Associated peak: 222,223
Repeated 4 time
Molarity: 31.82M
Forward: ABCG2.F5
Reverse: ABCG2.R5
Expected peak: 204
Associated peak: 222,223
Repeated 4 time
Molarity: 31.82M
Forward: ABCG2.F5
Reverse: ABCG2.R5
Reaction
Expected peak: 228
Associated peak: 236,238,245
Repeated 4 time
Molarity: 20.97M
Forward: ABCG2.F7
Reverse: ABCG2.R7
Expected peak: 228
Associated peak: 236,238,245
Repeated 4 time
Molarity: 20.97M
Forward: ABCG2.F7
Reverse: ABCG2.R7
Reaction
Expected peak: 237
Associated peak: 254,255
Repeated 4 time
Molarity: 15.88M
Forward: ABCG2.F4
Reverse: ABCG2.R4
Expected peak: 237
Associated peak: 254,255
Repeated 4 time
Molarity: 15.88M
Forward: ABCG2.F4
Reverse: ABCG2.R4
Reaction
Expected peak: 280
Associated peak: 287,288,289
Repeated 4 time
Molarity: 27.43M
Forward: ABCG2.F6
Reverse: ABCG2.R6
Expected peak: 280
Associated peak: 287,288,289
Repeated 4 time
Molarity: 27.43M
Forward: ABCG2.F6
Reverse: ABCG2.R6
Reaction
Expected peak: 401
Associated peak: 440,442,443
Repeated 4 time
Molarity: 18.50M
Forward: ABCG2.F8
Reverse: ABCG2.R8
Expected peak: 401
Associated peak: 440,442,443
Repeated 4 time
Molarity: 18.50M
Forward: ABCG2.F8
Reverse: ABCG2.R8
Exon
Length: 529
Transcript: ABCG2.bAug05
Length: 529
Transcript: ABCG2.bAug05
Exon
Length: 222
Transcript: ABCG2.bAug05
Length: 222
Transcript: ABCG2.bAug05
Exon
Length: 60
Transcript: ABCG2.bAug05
Length: 60
Transcript: ABCG2.bAug05
Exon
Length: 115
Transcript: ABCG2.bAug05
Length: 115
Transcript: ABCG2.bAug05
Exon
Length: 153
Transcript: ABCG2.bAug05
Length: 153
Transcript: ABCG2.bAug05
Exon
Length: 158
Transcript: ABCG2.bAug05
Length: 158
Transcript: ABCG2.bAug05
Exon
Length: 152
Transcript: ABCG2.bAug05
Length: 152
Transcript: ABCG2.bAug05
Exon
Length: 102
Transcript: ABCG2.bAug05
Length: 102
Transcript: ABCG2.bAug05
Exon
Length: 251
Transcript: ABCG2.bAug05
Length: 251
Transcript: ABCG2.bAug05
Exon
Length: 83
Transcript: ABCG2.bAug05
Length: 83
Transcript: ABCG2.bAug05
Exon
Length: 90
Transcript: ABCG2.bAug05
Length: 90
Transcript: ABCG2.bAug05
Exon
Length: 125
Transcript: ABCG2.bAug05
Length: 125
Transcript: ABCG2.bAug05
Exon
Length: 155
Transcript: ABCG2.bAug05
Length: 155
Transcript: ABCG2.bAug05
Exon
Length: 90
Transcript: ABCG2.bAug05
Length: 90
Transcript: ABCG2.bAug05
Exon
Length: 83
Transcript: ABCG2.bAug05
Length: 83
Transcript: ABCG2.bAug05
Exon
Length: 2117
Transcript: ABCG2.bAug05
Length: 2117
Transcript: ABCG2.bAug05
Intron
Length: 18371
Transcript: ABCG2.bAug05
Length: 18371
Transcript: ABCG2.bAug05
Intron
Length: 7157
Transcript: ABCG2.bAug05
Length: 7157
Transcript: ABCG2.bAug05
Intron
Length: 658
Transcript: ABCG2.bAug05
Length: 658
Transcript: ABCG2.bAug05
Intron
Length: 589
Transcript: ABCG2.bAug05
Length: 589
Transcript: ABCG2.bAug05
Intron
Length: 9268
Transcript: ABCG2.bAug05
Length: 9268
Transcript: ABCG2.bAug05
Intron
Length: 3374
Transcript: ABCG2.bAug05
Length: 3374
Transcript: ABCG2.bAug05
Intron
Length: 3050
Transcript: ABCG2.bAug05
Length: 3050
Transcript: ABCG2.bAug05
Intron
Length: 1403
Transcript: ABCG2.bAug05
Length: 1403
Transcript: ABCG2.bAug05
Intron
Length: 6036
Transcript: ABCG2.bAug05
Length: 6036
Transcript: ABCG2.bAug05
Intron
Length: 5864
Transcript: ABCG2.bAug05
Length: 5864
Transcript: ABCG2.bAug05
Intron
Length: 1781
Transcript: ABCG2.bAug05
Length: 1781
Transcript: ABCG2.bAug05
Intron
Length: 1716
Transcript: ABCG2.bAug05
Length: 1716
Transcript: ABCG2.bAug05
Intron
Length: 1843
Transcript: ABCG2.bAug05
Length: 1843
Transcript: ABCG2.bAug05
Intron
Length: 860
Transcript: ABCG2.bAug05
Length: 860
Transcript: ABCG2.bAug05
Intron
Length: 2195
Transcript: ABCG2.bAug05
Length: 2195
Transcript: ABCG2.bAug05
Reaction
Expected peak: 149
Associated peak: 149,163,164
Repeated 4 time
Molarity: 61.97M
Forward: ABCG2.F3
Reverse: ABCG2.R3
Expected peak: 149
Associated peak: 149,163,164
Repeated 4 time
Molarity: 61.97M
Forward: ABCG2.F3
Reverse: ABCG2.R3
Reaction
Expected peak: 210
Associated peak: 222,223
Repeated 4 time
Molarity: 31.82M
Forward: ABCG2.F5
Reverse: ABCG2.R5
Expected peak: 210
Associated peak: 222,223
Repeated 4 time
Molarity: 31.82M
Forward: ABCG2.F5
Reverse: ABCG2.R5
Reaction
Expected peak: 228
Associated peak: 236,238,245
Repeated 4 time
Molarity: 20.97M
Forward: ABCG2.F7
Reverse: ABCG2.R7
Expected peak: 228
Associated peak: 236,238,245
Repeated 4 time
Molarity: 20.97M
Forward: ABCG2.F7
Reverse: ABCG2.R7
Reaction
Expected peak: 237
Associated peak: 254,255
Repeated 4 time
Molarity: 15.88M
Forward: ABCG2.F4
Reverse: ABCG2.R4
Expected peak: 237
Associated peak: 254,255
Repeated 4 time
Molarity: 15.88M
Forward: ABCG2.F4
Reverse: ABCG2.R4
Reaction
Expected peak: 286
Associated peak: 287,288,289
Repeated 4 time
Molarity: 27.43M
Forward: ABCG2.F6
Reverse: ABCG2.R6
Expected peak: 286
Associated peak: 287,288,289
Repeated 4 time
Molarity: 27.43M
Forward: ABCG2.F6
Reverse: ABCG2.R6
Reaction
Expected peak: 369
Associated peak: 371,395,397
Repeated 4 time
Molarity: 4.72M
Forward: ABCG2.F1
Reverse: ABCG2.R1
Expected peak: 369
Associated peak: 371,395,397
Repeated 4 time
Molarity: 4.72M
Forward: ABCG2.F1
Reverse: ABCG2.R1
Reaction
Expected peak: 374
Associated peak: 371,400,402
Repeated 4 time
Molarity: 1.65M
Forward: ABCG2.F2
Reverse: ABCG2.R2
Expected peak: 374
Associated peak: 371,400,402
Repeated 4 time
Molarity: 1.65M
Forward: ABCG2.F2
Reverse: ABCG2.R2
Reaction
Expected peak: 401
Associated peak: 440,442,443
Repeated 4 time
Molarity: 18.50M
Forward: ABCG2.F8
Reverse: ABCG2.R8
Expected peak: 401
Associated peak: 440,442,443
Repeated 4 time
Molarity: 18.50M
Forward: ABCG2.F8
Reverse: ABCG2.R8
Exon
Length: 329
Transcript: ABCG2.cAug05
Length: 329
Transcript: ABCG2.cAug05
Exon
Length: 222
Transcript: ABCG2.cAug05
Length: 222
Transcript: ABCG2.cAug05
Exon
Length: 60
Transcript: ABCG2.cAug05
Length: 60
Transcript: ABCG2.cAug05
Exon
Length: 115
Transcript: ABCG2.cAug05
Length: 115
Transcript: ABCG2.cAug05
Exon
Length: 153
Transcript: ABCG2.cAug05
Length: 153
Transcript: ABCG2.cAug05
Exon
Length: 158
Transcript: ABCG2.cAug05
Length: 158
Transcript: ABCG2.cAug05
Exon
Length: 152
Transcript: ABCG2.cAug05
Length: 152
Transcript: ABCG2.cAug05
Exon
Length: 102
Transcript: ABCG2.cAug05
Length: 102
Transcript: ABCG2.cAug05
Exon
Length: 251
Transcript: ABCG2.cAug05
Length: 251
Transcript: ABCG2.cAug05
Exon
Length: 83
Transcript: ABCG2.cAug05
Length: 83
Transcript: ABCG2.cAug05
Exon
Length: 90
Transcript: ABCG2.cAug05
Length: 90
Transcript: ABCG2.cAug05
Exon
Length: 125
Transcript: ABCG2.cAug05
Length: 125
Transcript: ABCG2.cAug05
Exon
Length: 155
Transcript: ABCG2.cAug05
Length: 155
Transcript: ABCG2.cAug05
Exon
Length: 80
Transcript: ABCG2.cAug05
Length: 80
Transcript: ABCG2.cAug05
Exon
Length: 83
Transcript: ABCG2.cAug05
Length: 83
Transcript: ABCG2.cAug05
Exon
Length: 2117
Transcript: ABCG2.cAug05
Length: 2117
Transcript: ABCG2.cAug05
Intron
Length: 90979
Transcript: ABCG2.cAug05
Length: 90979
Transcript: ABCG2.cAug05
Intron
Length: 7157
Transcript: ABCG2.cAug05
Length: 7157
Transcript: ABCG2.cAug05
Intron
Length: 658
Transcript: ABCG2.cAug05
Length: 658
Transcript: ABCG2.cAug05
Intron
Length: 589
Transcript: ABCG2.cAug05
Length: 589
Transcript: ABCG2.cAug05
Intron
Length: 9268
Transcript: ABCG2.cAug05
Length: 9268
Transcript: ABCG2.cAug05
Intron
Length: 3374
Transcript: ABCG2.cAug05
Length: 3374
Transcript: ABCG2.cAug05
Intron
Length: 3050
Transcript: ABCG2.cAug05
Length: 3050
Transcript: ABCG2.cAug05
Intron
Length: 1403
Transcript: ABCG2.cAug05
Length: 1403
Transcript: ABCG2.cAug05
Intron
Length: 6036
Transcript: ABCG2.cAug05
Length: 6036
Transcript: ABCG2.cAug05
Intron
Length: 5864
Transcript: ABCG2.cAug05
Length: 5864
Transcript: ABCG2.cAug05
Intron
Length: 1781
Transcript: ABCG2.cAug05
Length: 1781
Transcript: ABCG2.cAug05
Intron
Length: 1716
Transcript: ABCG2.cAug05
Length: 1716
Transcript: ABCG2.cAug05
Intron
Length: 1853
Transcript: ABCG2.cAug05
Length: 1853
Transcript: ABCG2.cAug05
Intron
Length: 860
Transcript: ABCG2.cAug05
Length: 860
Transcript: ABCG2.cAug05
Intron
Length: 2195
Transcript: ABCG2.cAug05
Length: 2195
Transcript: ABCG2.cAug05
Reaction
Expected peak: 139
Associated peak: 149,163,164
Repeated 4 time
Molarity: 61.97M
Forward: ABCG2.F3
Reverse: ABCG2.R3
Expected peak: 139
Associated peak: 149,163,164
Repeated 4 time
Molarity: 61.97M
Forward: ABCG2.F3
Reverse: ABCG2.R3
Reaction
Expected peak: 210
Associated peak: 222,223
Repeated 4 time
Molarity: 31.82M
Forward: ABCG2.F5
Reverse: ABCG2.R5
Expected peak: 210
Associated peak: 222,223
Repeated 4 time
Molarity: 31.82M
Forward: ABCG2.F5
Reverse: ABCG2.R5
Reaction
Expected peak: 227
Associated peak: 254,255
Repeated 4 time
Molarity: 15.88M
Forward: ABCG2.F4
Reverse: ABCG2.R4
Expected peak: 227
Associated peak: 254,255
Repeated 4 time
Molarity: 15.88M
Forward: ABCG2.F4
Reverse: ABCG2.R4
Reaction
Expected peak: 228
Associated peak: 236,238,245
Repeated 4 time
Molarity: 20.97M
Forward: ABCG2.F7
Reverse: ABCG2.R7
Expected peak: 228
Associated peak: 236,238,245
Repeated 4 time
Molarity: 20.97M
Forward: ABCG2.F7
Reverse: ABCG2.R7
Reaction
Expected peak: 286
Associated peak: 287,288,289
Repeated 4 time
Molarity: 27.43M
Forward: ABCG2.F6
Reverse: ABCG2.R6
Expected peak: 286
Associated peak: 287,288,289
Repeated 4 time
Molarity: 27.43M
Forward: ABCG2.F6
Reverse: ABCG2.R6
Reaction
Expected peak: 401
Associated peak: 440,442,443
Repeated 4 time
Molarity: 18.50M
Forward: ABCG2.F8
Reverse: ABCG2.R8
Expected peak: 401
Associated peak: 440,442,443
Repeated 4 time
Molarity: 18.50M
Forward: ABCG2.F8
Reverse: ABCG2.R8
Exon
Length: 66
Transcript: ABCG2.dAug05
Length: 66
Transcript: ABCG2.dAug05
Exon
Length: 222
Transcript: ABCG2.dAug05
Length: 222
Transcript: ABCG2.dAug05
Exon
Length: 60
Transcript: ABCG2.dAug05
Length: 60
Transcript: ABCG2.dAug05
Exon
Length: 115
Transcript: ABCG2.dAug05
Length: 115
Transcript: ABCG2.dAug05
Exon
Length: 153
Transcript: ABCG2.dAug05
Length: 153
Transcript: ABCG2.dAug05
Exon
Length: 80
Transcript: ABCG2.dAug05
Length: 80
Transcript: ABCG2.dAug05
Intron
Length: 18562
Transcript: ABCG2.dAug05
Length: 18562
Transcript: ABCG2.dAug05
Intron
Length: 7157
Transcript: ABCG2.dAug05
Length: 7157
Transcript: ABCG2.dAug05
Intron
Length: 658
Transcript: ABCG2.dAug05
Length: 658
Transcript: ABCG2.dAug05
Intron
Length: 589
Transcript: ABCG2.dAug05
Length: 589
Transcript: ABCG2.dAug05
Intron
Length: 9268
Transcript: ABCG2.dAug05
Length: 9268
Transcript: ABCG2.dAug05
Reaction
Expected peak: 178
Associated peak: 181,189,190
Repeated 4 time
Molarity: 14.83M
Forward: ABCG2.F1
Reverse: ABCG2.R1
Expected peak: 178
Associated peak: 181,189,190
Repeated 4 time
Molarity: 14.83M
Forward: ABCG2.F1
Reverse: ABCG2.R1
Reaction
Expected peak: 183
Associated peak: 182,193,195
Repeated 4 time
Molarity: 10.20M
Forward: ABCG2.F2
Reverse: ABCG2.R2
Expected peak: 183
Associated peak: 182,193,195
Repeated 4 time
Molarity: 10.20M
Forward: ABCG2.F2
Reverse: ABCG2.R2
Exon
Length: 155
Transcript: ABCG2.eAug05
Length: 155
Transcript: ABCG2.eAug05
Exon
Length: 90
Transcript: ABCG2.eAug05
Length: 90
Transcript: ABCG2.eAug05
Exon
Length: 214
Transcript: ABCG2.eAug05
Length: 214
Transcript: ABCG2.eAug05
Intron
Length: 1843
Transcript: ABCG2.eAug05
Length: 1843
Transcript: ABCG2.eAug05
Intron
Length: 3138
Transcript: ABCG2.eAug05
Length: 3138
Transcript: ABCG2.eAug05
Reaction
Expected peak: 145
Associated peak: 170
Repeated 4 time
Molarity: 8.70M
Forward: ABCG2.F7
Reverse: ABCG2.R7
Expected peak: 145
Associated peak: 170
Repeated 4 time
Molarity: 8.70M
Forward: ABCG2.F7
Reverse: ABCG2.R7
Reaction
Expected peak: 149
Associated peak: 149,163,164
Repeated 4 time
Molarity: 61.97M
Forward: ABCG2.F3
Reverse: ABCG2.R3
Expected peak: 149
Associated peak: 149,163,164
Repeated 4 time
Molarity: 61.97M
Forward: ABCG2.F3
Reverse: ABCG2.R3
Reaction
Expected peak: 237
Associated peak: 254,255
Repeated 4 time
Molarity: 15.88M
Forward: ABCG2.F4
Reverse: ABCG2.R4
Expected peak: 237
Associated peak: 254,255
Repeated 4 time
Molarity: 15.88M
Forward: ABCG2.F4
Reverse: ABCG2.R4
Reaction
Expected peak: 318
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCG2.F8
Reverse: ABCG2.R8
Expected peak: 318
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: ABCG2.F8
Reverse: ABCG2.R8
ABCG2.F8
ATCTTGGCTGTCATGGCTTC
ATCTTGGCTGTCATGGCTTC
ABCG2.F7
GGTCAATCTCACAACCATTGC
GGTCAATCTCACAACCATTGC
ABCG2.R5
GAAGGAGGTGGTGTAGCTGATC
GAAGGAGGTGGTGTAGCTGATC
ABCG2.R3
GCAATGGTTGTGAGATTGACC
GCAATGGTTGTGAGATTGACC
ABCG2.F2
CAGGAGGGAAGAGGCAGTG
CAGGAGGGAAGAGGCAGTG
ABCG2.F5
GCTGTGGCATTAAACAGAGAAG
GCTGTGGCATTAAACAGAGAAG
ABCG2.R7
ACGTGATTCTTCCACAAGCC
ACGTGATTCTTCCACAAGCC
ABCG2.R8
TGCTGTGCAACAGTGTGATG
TGCTGTGCAACAGTGTGATG
ABCG2.R2
TTCAGGTCATTGGAAGCTGTC
TTCAGGTCATTGGAAGCTGTC
ABCG2.F4
ATTGAAGCCAAAGGCAGATG
ATTGAAGCCAAAGGCAGATG
ABCG2.R6
GAATGAACGCTTGGAAACCC
GAATGAACGCTTGGAAACCC
ABCG2.R4
CCATATCGTGGAATGCTGAAG
CCATATCGTGGAATGCTGAAG
ABCG2.F1
TCCCACTGAGATTGAGAGACG
TCCCACTGAGATTGAGAGACG
ABCG2.R1
CACAGCTCCTTCAGTAAATGCC
CACAGCTCCTTCAGTAAATGCC
ABCG2.F6
TGCAGACTTCTTCTTGGACATC
TGCAGACTTCTTCTTGGACATC
ABCG2.F3
CTTATGATGGTGGCTTATTCAGC
CTTATGATGGTGGCTTATTCAGC