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Identification of alternative splicing markers for breast cancer
1. Breast Discovery Screen
Transcript map
: ADAM19
Exon
Length: 173
Transcript: ADAM19.aAug05
Length: 173
Transcript: ADAM19.aAug05
Exon
Length: 86
Transcript: ADAM19.aAug05
Length: 86
Transcript: ADAM19.aAug05
Exon
Length: 71
Transcript: ADAM19.aAug05
Length: 71
Transcript: ADAM19.aAug05
Exon
Length: 79
Transcript: ADAM19.aAug05
Length: 79
Transcript: ADAM19.aAug05
Exon
Length: 77
Transcript: ADAM19.aAug05
Length: 77
Transcript: ADAM19.aAug05
Exon
Length: 193
Transcript: ADAM19.aAug05
Length: 193
Transcript: ADAM19.aAug05
Exon
Length: 66
Transcript: ADAM19.aAug05
Length: 66
Transcript: ADAM19.aAug05
Exon
Length: 72
Transcript: ADAM19.aAug05
Length: 72
Transcript: ADAM19.aAug05
Exon
Length: 167
Transcript: ADAM19.aAug05
Length: 167
Transcript: ADAM19.aAug05
Exon
Length: 85
Transcript: ADAM19.aAug05
Length: 85
Transcript: ADAM19.aAug05
Exon
Length: 140
Transcript: ADAM19.aAug05
Length: 140
Transcript: ADAM19.aAug05
Exon
Length: 178
Transcript: ADAM19.aAug05
Length: 178
Transcript: ADAM19.aAug05
Exon
Length: 90
Transcript: ADAM19.aAug05
Length: 90
Transcript: ADAM19.aAug05
Exon
Length: 196
Transcript: ADAM19.aAug05
Length: 196
Transcript: ADAM19.aAug05
Exon
Length: 109
Transcript: ADAM19.aAug05
Length: 109
Transcript: ADAM19.aAug05
Exon
Length: 205
Transcript: ADAM19.aAug05
Length: 205
Transcript: ADAM19.aAug05
Exon
Length: 78
Transcript: ADAM19.aAug05
Length: 78
Transcript: ADAM19.aAug05
Exon
Length: 109
Transcript: ADAM19.aAug05
Length: 109
Transcript: ADAM19.aAug05
Exon
Length: 145
Transcript: ADAM19.aAug05
Length: 145
Transcript: ADAM19.aAug05
Exon
Length: 85
Transcript: ADAM19.aAug05
Length: 85
Transcript: ADAM19.aAug05
Exon
Length: 225
Transcript: ADAM19.aAug05
Length: 225
Transcript: ADAM19.aAug05
Exon
Length: 717
Transcript: ADAM19.aAug05
Length: 717
Transcript: ADAM19.aAug05
Intron
Length: 4622
Transcript: ADAM19.aAug05
Length: 4622
Transcript: ADAM19.aAug05
Intron
Length: 6451
Transcript: ADAM19.aAug05
Length: 6451
Transcript: ADAM19.aAug05
Intron
Length: 26381
Transcript: ADAM19.aAug05
Length: 26381
Transcript: ADAM19.aAug05
Intron
Length: 7029
Transcript: ADAM19.aAug05
Length: 7029
Transcript: ADAM19.aAug05
Intron
Length: 10775
Transcript: ADAM19.aAug05
Length: 10775
Transcript: ADAM19.aAug05
Intron
Length: 950
Transcript: ADAM19.aAug05
Length: 950
Transcript: ADAM19.aAug05
Intron
Length: 5317
Transcript: ADAM19.aAug05
Length: 5317
Transcript: ADAM19.aAug05
Intron
Length: 3966
Transcript: ADAM19.aAug05
Length: 3966
Transcript: ADAM19.aAug05
Intron
Length: 2160
Transcript: ADAM19.aAug05
Length: 2160
Transcript: ADAM19.aAug05
Intron
Length: 1247
Transcript: ADAM19.aAug05
Length: 1247
Transcript: ADAM19.aAug05
Intron
Length: 2688
Transcript: ADAM19.aAug05
Length: 2688
Transcript: ADAM19.aAug05
Intron
Length: 3140
Transcript: ADAM19.aAug05
Length: 3140
Transcript: ADAM19.aAug05
Intron
Length: 2483
Transcript: ADAM19.aAug05
Length: 2483
Transcript: ADAM19.aAug05
Intron
Length: 2098
Transcript: ADAM19.aAug05
Length: 2098
Transcript: ADAM19.aAug05
Intron
Length: 1509
Transcript: ADAM19.aAug05
Length: 1509
Transcript: ADAM19.aAug05
Intron
Length: 1060
Transcript: ADAM19.aAug05
Length: 1060
Transcript: ADAM19.aAug05
Intron
Length: 111
Transcript: ADAM19.aAug05
Length: 111
Transcript: ADAM19.aAug05
Intron
Length: 1160
Transcript: ADAM19.aAug05
Length: 1160
Transcript: ADAM19.aAug05
Intron
Length: 1123
Transcript: ADAM19.aAug05
Length: 1123
Transcript: ADAM19.aAug05
Intron
Length: 612
Transcript: ADAM19.aAug05
Length: 612
Transcript: ADAM19.aAug05
Intron
Length: 6321
Transcript: ADAM19.aAug05
Length: 6321
Transcript: ADAM19.aAug05
Reaction
Expected peak: 122
Associated peak: 131,132,133,135
Repeated 4 time
Molarity: 60.95M
Forward: ADAM19.F1
Reverse: ADAM19.R1
Expected peak: 122
Associated peak: 131,132,133,135
Repeated 4 time
Molarity: 60.95M
Forward: ADAM19.F1
Reverse: ADAM19.R1
Reaction
Expected peak: 229
Associated peak: 243,244
Repeated 4 time
Molarity: 32.95M
Forward: ADAM19.F2
Reverse: ADAM19.R2
Expected peak: 229
Associated peak: 243,244
Repeated 4 time
Molarity: 32.95M
Forward: ADAM19.F2
Reverse: ADAM19.R2
Exon
Length: 164
Transcript: ADAM19.bAug05
Length: 164
Transcript: ADAM19.bAug05
Exon
Length: 86
Transcript: ADAM19.bAug05
Length: 86
Transcript: ADAM19.bAug05
Exon
Length: 71
Transcript: ADAM19.bAug05
Length: 71
Transcript: ADAM19.bAug05
Exon
Length: 79
Transcript: ADAM19.bAug05
Length: 79
Transcript: ADAM19.bAug05
Exon
Length: 77
Transcript: ADAM19.bAug05
Length: 77
Transcript: ADAM19.bAug05
Exon
Length: 193
Transcript: ADAM19.bAug05
Length: 193
Transcript: ADAM19.bAug05
Exon
Length: 66
Transcript: ADAM19.bAug05
Length: 66
Transcript: ADAM19.bAug05
Exon
Length: 72
Transcript: ADAM19.bAug05
Length: 72
Transcript: ADAM19.bAug05
Exon
Length: 167
Transcript: ADAM19.bAug05
Length: 167
Transcript: ADAM19.bAug05
Exon
Length: 85
Transcript: ADAM19.bAug05
Length: 85
Transcript: ADAM19.bAug05
Exon
Length: 140
Transcript: ADAM19.bAug05
Length: 140
Transcript: ADAM19.bAug05
Exon
Length: 178
Transcript: ADAM19.bAug05
Length: 178
Transcript: ADAM19.bAug05
Exon
Length: 90
Transcript: ADAM19.bAug05
Length: 90
Transcript: ADAM19.bAug05
Exon
Length: 196
Transcript: ADAM19.bAug05
Length: 196
Transcript: ADAM19.bAug05
Exon
Length: 109
Transcript: ADAM19.bAug05
Length: 109
Transcript: ADAM19.bAug05
Exon
Length: 205
Transcript: ADAM19.bAug05
Length: 205
Transcript: ADAM19.bAug05
Exon
Length: 78
Transcript: ADAM19.bAug05
Length: 78
Transcript: ADAM19.bAug05
Exon
Length: 109
Transcript: ADAM19.bAug05
Length: 109
Transcript: ADAM19.bAug05
Exon
Length: 145
Transcript: ADAM19.bAug05
Length: 145
Transcript: ADAM19.bAug05
Exon
Length: 85
Transcript: ADAM19.bAug05
Length: 85
Transcript: ADAM19.bAug05
Exon
Length: 225
Transcript: ADAM19.bAug05
Length: 225
Transcript: ADAM19.bAug05
Exon
Length: 153
Transcript: ADAM19.bAug05
Length: 153
Transcript: ADAM19.bAug05
Exon
Length: 3700
Transcript: ADAM19.bAug05
Length: 3700
Transcript: ADAM19.bAug05
Intron
Length: 4622
Transcript: ADAM19.bAug05
Length: 4622
Transcript: ADAM19.bAug05
Intron
Length: 6451
Transcript: ADAM19.bAug05
Length: 6451
Transcript: ADAM19.bAug05
Intron
Length: 26381
Transcript: ADAM19.bAug05
Length: 26381
Transcript: ADAM19.bAug05
Intron
Length: 7029
Transcript: ADAM19.bAug05
Length: 7029
Transcript: ADAM19.bAug05
Intron
Length: 10775
Transcript: ADAM19.bAug05
Length: 10775
Transcript: ADAM19.bAug05
Intron
Length: 950
Transcript: ADAM19.bAug05
Length: 950
Transcript: ADAM19.bAug05
Intron
Length: 5317
Transcript: ADAM19.bAug05
Length: 5317
Transcript: ADAM19.bAug05
Intron
Length: 3966
Transcript: ADAM19.bAug05
Length: 3966
Transcript: ADAM19.bAug05
Intron
Length: 2160
Transcript: ADAM19.bAug05
Length: 2160
Transcript: ADAM19.bAug05
Intron
Length: 1247
Transcript: ADAM19.bAug05
Length: 1247
Transcript: ADAM19.bAug05
Intron
Length: 2688
Transcript: ADAM19.bAug05
Length: 2688
Transcript: ADAM19.bAug05
Intron
Length: 3140
Transcript: ADAM19.bAug05
Length: 3140
Transcript: ADAM19.bAug05
Intron
Length: 2483
Transcript: ADAM19.bAug05
Length: 2483
Transcript: ADAM19.bAug05
Intron
Length: 2098
Transcript: ADAM19.bAug05
Length: 2098
Transcript: ADAM19.bAug05
Intron
Length: 1509
Transcript: ADAM19.bAug05
Length: 1509
Transcript: ADAM19.bAug05
Intron
Length: 1060
Transcript: ADAM19.bAug05
Length: 1060
Transcript: ADAM19.bAug05
Intron
Length: 111
Transcript: ADAM19.bAug05
Length: 111
Transcript: ADAM19.bAug05
Intron
Length: 1160
Transcript: ADAM19.bAug05
Length: 1160
Transcript: ADAM19.bAug05
Intron
Length: 1123
Transcript: ADAM19.bAug05
Length: 1123
Transcript: ADAM19.bAug05
Intron
Length: 612
Transcript: ADAM19.bAug05
Length: 612
Transcript: ADAM19.bAug05
Intron
Length: 6321
Transcript: ADAM19.bAug05
Length: 6321
Transcript: ADAM19.bAug05
Intron
Length: 788
Transcript: ADAM19.bAug05
Length: 788
Transcript: ADAM19.bAug05
Reaction
Expected peak: 122
Associated peak: 131,132,133,135
Repeated 4 time
Molarity: 60.95M
Forward: ADAM19.F1
Reverse: ADAM19.R1
Expected peak: 122
Associated peak: 131,132,133,135
Repeated 4 time
Molarity: 60.95M
Forward: ADAM19.F1
Reverse: ADAM19.R1
Reaction
Expected peak: 229
Associated peak: 243,244
Repeated 4 time
Molarity: 32.95M
Forward: ADAM19.F2
Reverse: ADAM19.R2
Expected peak: 229
Associated peak: 243,244
Repeated 4 time
Molarity: 32.95M
Forward: ADAM19.F2
Reverse: ADAM19.R2
Exon
Length: 173
Transcript: ADAM19.cAug05
Length: 173
Transcript: ADAM19.cAug05
Exon
Length: 86
Transcript: ADAM19.cAug05
Length: 86
Transcript: ADAM19.cAug05
Exon
Length: 71
Transcript: ADAM19.cAug05
Length: 71
Transcript: ADAM19.cAug05
Exon
Length: 79
Transcript: ADAM19.cAug05
Length: 79
Transcript: ADAM19.cAug05
Exon
Length: 77
Transcript: ADAM19.cAug05
Length: 77
Transcript: ADAM19.cAug05
Exon
Length: 193
Transcript: ADAM19.cAug05
Length: 193
Transcript: ADAM19.cAug05
Exon
Length: 66
Transcript: ADAM19.cAug05
Length: 66
Transcript: ADAM19.cAug05
Exon
Length: 82
Transcript: ADAM19.cAug05
Length: 82
Transcript: ADAM19.cAug05
Exon
Length: 167
Transcript: ADAM19.cAug05
Length: 167
Transcript: ADAM19.cAug05
Exon
Length: 85
Transcript: ADAM19.cAug05
Length: 85
Transcript: ADAM19.cAug05
Exon
Length: 140
Transcript: ADAM19.cAug05
Length: 140
Transcript: ADAM19.cAug05
Exon
Length: 178
Transcript: ADAM19.cAug05
Length: 178
Transcript: ADAM19.cAug05
Exon
Length: 90
Transcript: ADAM19.cAug05
Length: 90
Transcript: ADAM19.cAug05
Exon
Length: 196
Transcript: ADAM19.cAug05
Length: 196
Transcript: ADAM19.cAug05
Exon
Length: 109
Transcript: ADAM19.cAug05
Length: 109
Transcript: ADAM19.cAug05
Exon
Length: 205
Transcript: ADAM19.cAug05
Length: 205
Transcript: ADAM19.cAug05
Exon
Length: 78
Transcript: ADAM19.cAug05
Length: 78
Transcript: ADAM19.cAug05
Exon
Length: 109
Transcript: ADAM19.cAug05
Length: 109
Transcript: ADAM19.cAug05
Exon
Length: 145
Transcript: ADAM19.cAug05
Length: 145
Transcript: ADAM19.cAug05
Exon
Length: 85
Transcript: ADAM19.cAug05
Length: 85
Transcript: ADAM19.cAug05
Exon
Length: 225
Transcript: ADAM19.cAug05
Length: 225
Transcript: ADAM19.cAug05
Exon
Length: 54
Transcript: ADAM19.cAug05
Length: 54
Transcript: ADAM19.cAug05
Exon
Length: 1623
Transcript: ADAM19.cAug05
Length: 1623
Transcript: ADAM19.cAug05
Intron
Length: 4622
Transcript: ADAM19.cAug05
Length: 4622
Transcript: ADAM19.cAug05
Intron
Length: 6451
Transcript: ADAM19.cAug05
Length: 6451
Transcript: ADAM19.cAug05
Intron
Length: 26381
Transcript: ADAM19.cAug05
Length: 26381
Transcript: ADAM19.cAug05
Intron
Length: 7029
Transcript: ADAM19.cAug05
Length: 7029
Transcript: ADAM19.cAug05
Intron
Length: 10775
Transcript: ADAM19.cAug05
Length: 10775
Transcript: ADAM19.cAug05
Intron
Length: 950
Transcript: ADAM19.cAug05
Length: 950
Transcript: ADAM19.cAug05
Intron
Length: 5317
Transcript: ADAM19.cAug05
Length: 5317
Transcript: ADAM19.cAug05
Intron
Length: 3956
Transcript: ADAM19.cAug05
Length: 3956
Transcript: ADAM19.cAug05
Intron
Length: 2160
Transcript: ADAM19.cAug05
Length: 2160
Transcript: ADAM19.cAug05
Intron
Length: 1247
Transcript: ADAM19.cAug05
Length: 1247
Transcript: ADAM19.cAug05
Intron
Length: 2688
Transcript: ADAM19.cAug05
Length: 2688
Transcript: ADAM19.cAug05
Intron
Length: 3140
Transcript: ADAM19.cAug05
Length: 3140
Transcript: ADAM19.cAug05
Intron
Length: 2483
Transcript: ADAM19.cAug05
Length: 2483
Transcript: ADAM19.cAug05
Intron
Length: 2098
Transcript: ADAM19.cAug05
Length: 2098
Transcript: ADAM19.cAug05
Intron
Length: 1509
Transcript: ADAM19.cAug05
Length: 1509
Transcript: ADAM19.cAug05
Intron
Length: 1060
Transcript: ADAM19.cAug05
Length: 1060
Transcript: ADAM19.cAug05
Intron
Length: 111
Transcript: ADAM19.cAug05
Length: 111
Transcript: ADAM19.cAug05
Intron
Length: 1160
Transcript: ADAM19.cAug05
Length: 1160
Transcript: ADAM19.cAug05
Intron
Length: 1123
Transcript: ADAM19.cAug05
Length: 1123
Transcript: ADAM19.cAug05
Intron
Length: 612
Transcript: ADAM19.cAug05
Length: 612
Transcript: ADAM19.cAug05
Intron
Length: 90050
Transcript: ADAM19.cAug05
Length: 90050
Transcript: ADAM19.cAug05
Intron
Length: 2481
Transcript: ADAM19.cAug05
Length: 2481
Transcript: ADAM19.cAug05
Reaction
Expected peak: 132
Associated peak: 131,133,135,141
Repeated 4 time
Molarity: 54.03M
Forward: ADAM19.F1
Reverse: ADAM19.R1
Expected peak: 132
Associated peak: 131,133,135,141
Repeated 4 time
Molarity: 54.03M
Forward: ADAM19.F1
Reverse: ADAM19.R1
Reaction
Expected peak: 239
Associated peak: 243,244
Repeated 4 time
Molarity: 32.95M
Forward: ADAM19.F2
Reverse: ADAM19.R2
Expected peak: 239
Associated peak: 243,244
Repeated 4 time
Molarity: 32.95M
Forward: ADAM19.F2
Reverse: ADAM19.R2
Exon
Length: 20
Transcript: ADAM19.dAug05
Length: 20
Transcript: ADAM19.dAug05
Exon
Length: 90
Transcript: ADAM19.dAug05
Length: 90
Transcript: ADAM19.dAug05
Exon
Length: 196
Transcript: ADAM19.dAug05
Length: 196
Transcript: ADAM19.dAug05
Exon
Length: 109
Transcript: ADAM19.dAug05
Length: 109
Transcript: ADAM19.dAug05
Exon
Length: 205
Transcript: ADAM19.dAug05
Length: 205
Transcript: ADAM19.dAug05
Exon
Length: 78
Transcript: ADAM19.dAug05
Length: 78
Transcript: ADAM19.dAug05
Exon
Length: 109
Transcript: ADAM19.dAug05
Length: 109
Transcript: ADAM19.dAug05
Exon
Length: 145
Transcript: ADAM19.dAug05
Length: 145
Transcript: ADAM19.dAug05
Exon
Length: 85
Transcript: ADAM19.dAug05
Length: 85
Transcript: ADAM19.dAug05
Exon
Length: 225
Transcript: ADAM19.dAug05
Length: 225
Transcript: ADAM19.dAug05
Exon
Length: 153
Transcript: ADAM19.dAug05
Length: 153
Transcript: ADAM19.dAug05
Exon
Length: 431
Transcript: ADAM19.dAug05
Length: 431
Transcript: ADAM19.dAug05
Intron
Length: 3140
Transcript: ADAM19.dAug05
Length: 3140
Transcript: ADAM19.dAug05
Intron
Length: 2483
Transcript: ADAM19.dAug05
Length: 2483
Transcript: ADAM19.dAug05
Intron
Length: 2098
Transcript: ADAM19.dAug05
Length: 2098
Transcript: ADAM19.dAug05
Intron
Length: 1509
Transcript: ADAM19.dAug05
Length: 1509
Transcript: ADAM19.dAug05
Intron
Length: 1060
Transcript: ADAM19.dAug05
Length: 1060
Transcript: ADAM19.dAug05
Intron
Length: 111
Transcript: ADAM19.dAug05
Length: 111
Transcript: ADAM19.dAug05
Intron
Length: 1160
Transcript: ADAM19.dAug05
Length: 1160
Transcript: ADAM19.dAug05
Intron
Length: 1123
Transcript: ADAM19.dAug05
Length: 1123
Transcript: ADAM19.dAug05
Intron
Length: 612
Transcript: ADAM19.dAug05
Length: 612
Transcript: ADAM19.dAug05
Intron
Length: 6321
Transcript: ADAM19.dAug05
Length: 6321
Transcript: ADAM19.dAug05
Intron
Length: 4055
Transcript: ADAM19.dAug05
Length: 4055
Transcript: ADAM19.dAug05
Exon
Length: 529
Transcript: ADAM19.shed1.aAug05
Length: 529
Transcript: ADAM19.shed1.aAug05
Exon
Length: 287
Transcript: ADAM19.shed2.aAug05
Length: 287
Transcript: ADAM19.shed2.aAug05
Exon
Length: 401
Transcript: ADAM19.shed3.aAug05
Length: 401
Transcript: ADAM19.shed3.aAug05
Exon
Length: 701
Transcript: ADAM19.shed4.aAug05
Length: 701
Transcript: ADAM19.shed4.aAug05
ADAM19.R2
ATTGGGCGTTGTCATGGTAC
ATTGGGCGTTGTCATGGTAC
ADAM19.F1
GCCACCAAACACAAGCTCATAG
GCCACCAAACACAAGCTCATAG
ADAM19.R1
GAAACTTCACACATGTTCCCG
GAAACTTCACACATGTTCCCG
ADAM19.F2
CAGAAGAATCGACGAGACCAG
CAGAAGAATCGACGAGACCAG