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Identification of alternative splicing markers for breast cancer
1. Breast Discovery Screen
Transcript map
: AKR1C2
Exon
Length: 116
Transcript: AKR1C2.aAug05
Length: 116
Transcript: AKR1C2.aAug05
Exon
Length: 100
Transcript: AKR1C2.aAug05
Length: 100
Transcript: AKR1C2.aAug05
Exon
Length: 263
Transcript: AKR1C2.aAug05
Length: 263
Transcript: AKR1C2.aAug05
Exon
Length: 168
Transcript: AKR1C2.aAug05
Length: 168
Transcript: AKR1C2.aAug05
Exon
Length: 117
Transcript: AKR1C2.aAug05
Length: 117
Transcript: AKR1C2.aAug05
Exon
Length: 78
Transcript: AKR1C2.aAug05
Length: 78
Transcript: AKR1C2.aAug05
Exon
Length: 123
Transcript: AKR1C2.aAug05
Length: 123
Transcript: AKR1C2.aAug05
Exon
Length: 110
Transcript: AKR1C2.aAug05
Length: 110
Transcript: AKR1C2.aAug05
Exon
Length: 166
Transcript: AKR1C2.aAug05
Length: 166
Transcript: AKR1C2.aAug05
Exon
Length: 83
Transcript: AKR1C2.aAug05
Length: 83
Transcript: AKR1C2.aAug05
Exon
Length: 266
Transcript: AKR1C2.aAug05
Length: 266
Transcript: AKR1C2.aAug05
Intron
Length: 10393
Transcript: AKR1C2.aAug05
Length: 10393
Transcript: AKR1C2.aAug05
Intron
Length: 3392
Transcript: AKR1C2.aAug05
Length: 3392
Transcript: AKR1C2.aAug05
Intron
Length: 2070
Transcript: AKR1C2.aAug05
Length: 2070
Transcript: AKR1C2.aAug05
Intron
Length: 847
Transcript: AKR1C2.aAug05
Length: 847
Transcript: AKR1C2.aAug05
Intron
Length: 1272
Transcript: AKR1C2.aAug05
Length: 1272
Transcript: AKR1C2.aAug05
Intron
Length: 452
Transcript: AKR1C2.aAug05
Length: 452
Transcript: AKR1C2.aAug05
Intron
Length: 2759
Transcript: AKR1C2.aAug05
Length: 2759
Transcript: AKR1C2.aAug05
Intron
Length: 271
Transcript: AKR1C2.aAug05
Length: 271
Transcript: AKR1C2.aAug05
Intron
Length: 3405
Transcript: AKR1C2.aAug05
Length: 3405
Transcript: AKR1C2.aAug05
Intron
Length: 1792
Transcript: AKR1C2.aAug05
Length: 1792
Transcript: AKR1C2.aAug05
Reaction
Expected peak: 114
Associated peak: 125,126
Repeated 4 time
Molarity: 34.18M
Forward: AKR1C2.F2
Reverse: AKR1C2.R2
Expected peak: 114
Associated peak: 125,126
Repeated 4 time
Molarity: 34.18M
Forward: AKR1C2.F2
Reverse: AKR1C2.R2
Reaction
Expected peak: 177
Associated peak: 188,189
Repeated 4 time
Molarity: 67.50M
Forward: AKR1C2.F1
Reverse: AKR1C2.R1
Expected peak: 177
Associated peak: 188,189
Repeated 4 time
Molarity: 67.50M
Forward: AKR1C2.F1
Reverse: AKR1C2.R1
Reaction
Expected peak: 307
Associated peak: 323,326
Repeated 4 time
Molarity: 5.15M
Forward: AKR1C2.F4
Reverse: AKR1C2.R4
Expected peak: 307
Associated peak: 323,326
Repeated 4 time
Molarity: 5.15M
Forward: AKR1C2.F4
Reverse: AKR1C2.R4
Reaction
Expected peak: 347
Associated peak: 380,381,382
Repeated 4 time
Molarity: 2.18M
Forward: AKR1C2.F3
Reverse: AKR1C2.R3
Expected peak: 347
Associated peak: 380,381,382
Repeated 4 time
Molarity: 2.18M
Forward: AKR1C2.F3
Reverse: AKR1C2.R3
Exon
Length: 116
Transcript: AKR1C2.bAug05
Length: 116
Transcript: AKR1C2.bAug05
Exon
Length: 263
Transcript: AKR1C2.bAug05
Length: 263
Transcript: AKR1C2.bAug05
Exon
Length: 168
Transcript: AKR1C2.bAug05
Length: 168
Transcript: AKR1C2.bAug05
Exon
Length: 117
Transcript: AKR1C2.bAug05
Length: 117
Transcript: AKR1C2.bAug05
Exon
Length: 78
Transcript: AKR1C2.bAug05
Length: 78
Transcript: AKR1C2.bAug05
Exon
Length: 123
Transcript: AKR1C2.bAug05
Length: 123
Transcript: AKR1C2.bAug05
Exon
Length: 110
Transcript: AKR1C2.bAug05
Length: 110
Transcript: AKR1C2.bAug05
Exon
Length: 166
Transcript: AKR1C2.bAug05
Length: 166
Transcript: AKR1C2.bAug05
Exon
Length: 83
Transcript: AKR1C2.bAug05
Length: 83
Transcript: AKR1C2.bAug05
Exon
Length: 265
Transcript: AKR1C2.bAug05
Length: 265
Transcript: AKR1C2.bAug05
Intron
Length: 13885
Transcript: AKR1C2.bAug05
Length: 13885
Transcript: AKR1C2.bAug05
Intron
Length: 2070
Transcript: AKR1C2.bAug05
Length: 2070
Transcript: AKR1C2.bAug05
Intron
Length: 847
Transcript: AKR1C2.bAug05
Length: 847
Transcript: AKR1C2.bAug05
Intron
Length: 1272
Transcript: AKR1C2.bAug05
Length: 1272
Transcript: AKR1C2.bAug05
Intron
Length: 452
Transcript: AKR1C2.bAug05
Length: 452
Transcript: AKR1C2.bAug05
Intron
Length: 2759
Transcript: AKR1C2.bAug05
Length: 2759
Transcript: AKR1C2.bAug05
Intron
Length: 271
Transcript: AKR1C2.bAug05
Length: 271
Transcript: AKR1C2.bAug05
Intron
Length: 3405
Transcript: AKR1C2.bAug05
Length: 3405
Transcript: AKR1C2.bAug05
Intron
Length: 1792
Transcript: AKR1C2.bAug05
Length: 1792
Transcript: AKR1C2.bAug05
Reaction
Expected peak: 114
Associated peak: 125,126
Repeated 4 time
Molarity: 34.18M
Forward: AKR1C2.F2
Reverse: AKR1C2.R2
Expected peak: 114
Associated peak: 125,126
Repeated 4 time
Molarity: 34.18M
Forward: AKR1C2.F2
Reverse: AKR1C2.R2
Reaction
Expected peak: 177
Associated peak: 188,189
Repeated 4 time
Molarity: 67.50M
Forward: AKR1C2.F1
Reverse: AKR1C2.R1
Expected peak: 177
Associated peak: 188,189
Repeated 4 time
Molarity: 67.50M
Forward: AKR1C2.F1
Reverse: AKR1C2.R1
Reaction
Expected peak: 207
Associated peak: 223,224,242
Repeated 4 time
Molarity: 2.83M
Forward: AKR1C2.F4
Reverse: AKR1C2.R4
Expected peak: 207
Associated peak: 223,224,242
Repeated 4 time
Molarity: 2.83M
Forward: AKR1C2.F4
Reverse: AKR1C2.R4
Reaction
Expected peak: 247
Associated peak: 260,276
Repeated 4 time
Molarity: 1.77M
Forward: AKR1C2.F3
Reverse: AKR1C2.R3
Expected peak: 247
Associated peak: 260,276
Repeated 4 time
Molarity: 1.77M
Forward: AKR1C2.F3
Reverse: AKR1C2.R3
Exon
Length: 15
Transcript: AKR1C2.cAug05
Length: 15
Transcript: AKR1C2.cAug05
Exon
Length: 97
Transcript: AKR1C2.cAug05
Length: 97
Transcript: AKR1C2.cAug05
Exon
Length: 168
Transcript: AKR1C2.cAug05
Length: 168
Transcript: AKR1C2.cAug05
Exon
Length: 117
Transcript: AKR1C2.cAug05
Length: 117
Transcript: AKR1C2.cAug05
Exon
Length: 78
Transcript: AKR1C2.cAug05
Length: 78
Transcript: AKR1C2.cAug05
Exon
Length: 123
Transcript: AKR1C2.cAug05
Length: 123
Transcript: AKR1C2.cAug05
Exon
Length: 63
Transcript: AKR1C2.cAug05
Length: 63
Transcript: AKR1C2.cAug05
Intron
Length: 5783
Transcript: AKR1C2.cAug05
Length: 5783
Transcript: AKR1C2.cAug05
Intron
Length: 2070
Transcript: AKR1C2.cAug05
Length: 2070
Transcript: AKR1C2.cAug05
Intron
Length: 847
Transcript: AKR1C2.cAug05
Length: 847
Transcript: AKR1C2.cAug05
Intron
Length: 1272
Transcript: AKR1C2.cAug05
Length: 1272
Transcript: AKR1C2.cAug05
Intron
Length: 452
Transcript: AKR1C2.cAug05
Length: 452
Transcript: AKR1C2.cAug05
Intron
Length: 2759
Transcript: AKR1C2.cAug05
Length: 2759
Transcript: AKR1C2.cAug05
Reaction
Expected peak: 114
Associated peak: 125,126
Repeated 4 time
Molarity: 34.18M
Forward: AKR1C2.F2
Reverse: AKR1C2.R2
Expected peak: 114
Associated peak: 125,126
Repeated 4 time
Molarity: 34.18M
Forward: AKR1C2.F2
Reverse: AKR1C2.R2
Reaction
Expected peak: 177
Associated peak: 188,189
Repeated 4 time
Molarity: 67.50M
Forward: AKR1C2.F1
Reverse: AKR1C2.R1
Expected peak: 177
Associated peak: 188,189
Repeated 4 time
Molarity: 67.50M
Forward: AKR1C2.F1
Reverse: AKR1C2.R1
Exon
Length: 31
Transcript: AKR1C2.dAug05
Length: 31
Transcript: AKR1C2.dAug05
Exon
Length: 117
Transcript: AKR1C2.dAug05
Length: 117
Transcript: AKR1C2.dAug05
Exon
Length: 74
Transcript: AKR1C2.dAug05
Length: 74
Transcript: AKR1C2.dAug05
Exon
Length: 123
Transcript: AKR1C2.dAug05
Length: 123
Transcript: AKR1C2.dAug05
Exon
Length: 110
Transcript: AKR1C2.dAug05
Length: 110
Transcript: AKR1C2.dAug05
Exon
Length: 822
Transcript: AKR1C2.dAug05
Length: 822
Transcript: AKR1C2.dAug05
Intron
Length: 847
Transcript: AKR1C2.dAug05
Length: 847
Transcript: AKR1C2.dAug05
Intron
Length: 1276
Transcript: AKR1C2.dAug05
Length: 1276
Transcript: AKR1C2.dAug05
Intron
Length: 452
Transcript: AKR1C2.dAug05
Length: 452
Transcript: AKR1C2.dAug05
Intron
Length: 2759
Transcript: AKR1C2.dAug05
Length: 2759
Transcript: AKR1C2.dAug05
Intron
Length: 271
Transcript: AKR1C2.dAug05
Length: 271
Transcript: AKR1C2.dAug05
Reaction
Expected peak: 110
Associated peak: 110,125,126
Repeated 4 time
Molarity: 40.33M
Forward: AKR1C2.F2
Reverse: AKR1C2.R2
Expected peak: 110
Associated peak: 110,125,126
Repeated 4 time
Molarity: 40.33M
Forward: AKR1C2.F2
Reverse: AKR1C2.R2
Reaction
Expected peak: 173
Associated peak: 188,189
Repeated 4 time
Molarity: 67.50M
Forward: AKR1C2.F1
Reverse: AKR1C2.R1
Expected peak: 173
Associated peak: 188,189
Repeated 4 time
Molarity: 67.50M
Forward: AKR1C2.F1
Reverse: AKR1C2.R1
Exon
Length: 415
Transcript: AKR1C2.shed1.aAug05
Length: 415
Transcript: AKR1C2.shed1.aAug05
Exon
Length: 1724
Transcript: AKR1C2.shed2.aAug05
Length: 1724
Transcript: AKR1C2.shed2.aAug05
Exon
Length: 278
Transcript: AKR1C2.shed3.aAug05
Length: 278
Transcript: AKR1C2.shed3.aAug05
Exon
Length: 278
Transcript: AKR1C2.shed4.aAug05
Length: 278
Transcript: AKR1C2.shed4.aAug05
AKR1C2.R3
ATGTTTCTTCCTCCCTCACAGG
ATGTTTCTTCCTCCCTCACAGG
AKR1C2.F2
GCCTTGGAAAGGTCACTGAA
GCCTTGGAAAGGTCACTGAA
AKR1C2.R4
ATCCATTTCTGTCACTGGCC
ATCCATTTCTGTCACTGGCC
AKR1C2.F3
TAGCACCTCCACCTTCTCTCTC
TAGCACCTCCACCTTCTCTCTC
AKR1C2.F1
CAATTCCCATCGACCAGAGT
CAATTCCCATCGACCAGAGT
AKR1C2.R2
TCCATTTTCATCTTTTGGGATC
TCCATTTTCATCTTTTGGGATC
AKR1C2.F4
CCCTTCACCTTCCTTCATGA
CCCTTCACCTTCCTTCATGA
AKR1C2.R1
GCACAGAGATCCACTGTGTCA
GCACAGAGATCCACTGTGTCA