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Supplementary data
Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
2. Array-192 -- RBM10 Knockdowns in BJ-TIELF, MCF-7, MDA-MB-231, SKOV-3, and PC-3
Transcript map
: AP2B1 CTRL BJT exp38
Exon
Length: 166
Transcript: NM_001030006
Length: 166
Transcript: NM_001030006
Exon
Length: 60
Transcript: NM_001030006
Length: 60
Transcript: NM_001030006
Exon
Length: 106
Transcript: NM_001030006
Length: 106
Transcript: NM_001030006
Exon
Length: 136
Transcript: NM_001030006
Length: 136
Transcript: NM_001030006
Exon
Length: 246
Transcript: NM_001030006
Length: 246
Transcript: NM_001030006
Exon
Length: 191
Transcript: NM_001030006
Length: 191
Transcript: NM_001030006
Exon
Length: 222
Transcript: NM_001030006
Length: 222
Transcript: NM_001030006
Exon
Length: 121
Transcript: NM_001030006
Length: 121
Transcript: NM_001030006
Exon
Length: 96
Transcript: NM_001030006
Length: 96
Transcript: NM_001030006
Exon
Length: 116
Transcript: NM_001030006
Length: 116
Transcript: NM_001030006
Exon
Length: 166
Transcript: NM_001030006
Length: 166
Transcript: NM_001030006
Exon
Length: 99
Transcript: NM_001030006
Length: 99
Transcript: NM_001030006
Exon
Length: 260
Transcript: NM_001030006
Length: 260
Transcript: NM_001030006
Exon
Length: 193
Transcript: NM_001030006
Length: 193
Transcript: NM_001030006
Exon
Length: 42
Transcript: NM_001030006
Length: 42
Transcript: NM_001030006
Exon
Length: 147
Transcript: NM_001030006
Length: 147
Transcript: NM_001030006
Exon
Length: 146
Transcript: NM_001030006
Length: 146
Transcript: NM_001030006
Exon
Length: 130
Transcript: NM_001030006
Length: 130
Transcript: NM_001030006
Exon
Length: 85
Transcript: NM_001030006
Length: 85
Transcript: NM_001030006
Exon
Length: 87
Transcript: NM_001030006
Length: 87
Transcript: NM_001030006
Exon
Length: 155
Transcript: NM_001030006
Length: 155
Transcript: NM_001030006
Exon
Length: 2793
Transcript: NM_001030006
Length: 2793
Transcript: NM_001030006
Intron
Length: 6579
Transcript: NM_001030006
Length: 6579
Transcript: NM_001030006
Intron
Length: 4162
Transcript: NM_001030006
Length: 4162
Transcript: NM_001030006
Intron
Length: 7369
Transcript: NM_001030006
Length: 7369
Transcript: NM_001030006
Intron
Length: 2301
Transcript: NM_001030006
Length: 2301
Transcript: NM_001030006
Intron
Length: 16009
Transcript: NM_001030006
Length: 16009
Transcript: NM_001030006
Intron
Length: 2033
Transcript: NM_001030006
Length: 2033
Transcript: NM_001030006
Intron
Length: 542
Transcript: NM_001030006
Length: 542
Transcript: NM_001030006
Intron
Length: 125
Transcript: NM_001030006
Length: 125
Transcript: NM_001030006
Intron
Length: 8614
Transcript: NM_001030006
Length: 8614
Transcript: NM_001030006
Intron
Length: 3138
Transcript: NM_001030006
Length: 3138
Transcript: NM_001030006
Intron
Length: 2116
Transcript: NM_001030006
Length: 2116
Transcript: NM_001030006
Intron
Length: 8554
Transcript: NM_001030006
Length: 8554
Transcript: NM_001030006
Intron
Length: 6809
Transcript: NM_001030006
Length: 6809
Transcript: NM_001030006
Intron
Length: 13065
Transcript: NM_001030006
Length: 13065
Transcript: NM_001030006
Intron
Length: 855
Transcript: NM_001030006
Length: 855
Transcript: NM_001030006
Intron
Length: 2275
Transcript: NM_001030006
Length: 2275
Transcript: NM_001030006
Intron
Length: 8373
Transcript: NM_001030006
Length: 8373
Transcript: NM_001030006
Intron
Length: 26399
Transcript: NM_001030006
Length: 26399
Transcript: NM_001030006
Intron
Length: 925
Transcript: NM_001030006
Length: 925
Transcript: NM_001030006
Intron
Length: 6874
Transcript: NM_001030006
Length: 6874
Transcript: NM_001030006
Intron
Length: 6275
Transcript: NM_001030006
Length: 6275
Transcript: NM_001030006
Reaction
Expected peak: 238
41.4M
refseq_AP2B1.F1
refseq_AP2B1.R1
Expected peak: 238
41.4M
refseq_AP2B1.F1
refseq_AP2B1.R1
Exon
Length: 166
Transcript: NM_001282
Length: 166
Transcript: NM_001282
Exon
Length: 60
Transcript: NM_001282
Length: 60
Transcript: NM_001282
Exon
Length: 106
Transcript: NM_001282
Length: 106
Transcript: NM_001282
Exon
Length: 136
Transcript: NM_001282
Length: 136
Transcript: NM_001282
Exon
Length: 246
Transcript: NM_001282
Length: 246
Transcript: NM_001282
Exon
Length: 191
Transcript: NM_001282
Length: 191
Transcript: NM_001282
Exon
Length: 222
Transcript: NM_001282
Length: 222
Transcript: NM_001282
Exon
Length: 121
Transcript: NM_001282
Length: 121
Transcript: NM_001282
Exon
Length: 96
Transcript: NM_001282
Length: 96
Transcript: NM_001282
Exon
Length: 116
Transcript: NM_001282
Length: 116
Transcript: NM_001282
Exon
Length: 166
Transcript: NM_001282
Length: 166
Transcript: NM_001282
Exon
Length: 99
Transcript: NM_001282
Length: 99
Transcript: NM_001282
Exon
Length: 260
Transcript: NM_001282
Length: 260
Transcript: NM_001282
Exon
Length: 193
Transcript: NM_001282
Length: 193
Transcript: NM_001282
Exon
Length: 147
Transcript: NM_001282
Length: 147
Transcript: NM_001282
Exon
Length: 146
Transcript: NM_001282
Length: 146
Transcript: NM_001282
Exon
Length: 130
Transcript: NM_001282
Length: 130
Transcript: NM_001282
Exon
Length: 85
Transcript: NM_001282
Length: 85
Transcript: NM_001282
Exon
Length: 87
Transcript: NM_001282
Length: 87
Transcript: NM_001282
Exon
Length: 155
Transcript: NM_001282
Length: 155
Transcript: NM_001282
Exon
Length: 2793
Transcript: NM_001282
Length: 2793
Transcript: NM_001282
Intron
Length: 6579
Transcript: NM_001282
Length: 6579
Transcript: NM_001282
Intron
Length: 4162
Transcript: NM_001282
Length: 4162
Transcript: NM_001282
Intron
Length: 7369
Transcript: NM_001282
Length: 7369
Transcript: NM_001282
Intron
Length: 2301
Transcript: NM_001282
Length: 2301
Transcript: NM_001282
Intron
Length: 16009
Transcript: NM_001282
Length: 16009
Transcript: NM_001282
Intron
Length: 2033
Transcript: NM_001282
Length: 2033
Transcript: NM_001282
Intron
Length: 542
Transcript: NM_001282
Length: 542
Transcript: NM_001282
Intron
Length: 125
Transcript: NM_001282
Length: 125
Transcript: NM_001282
Intron
Length: 8614
Transcript: NM_001282
Length: 8614
Transcript: NM_001282
Intron
Length: 3138
Transcript: NM_001282
Length: 3138
Transcript: NM_001282
Intron
Length: 2116
Transcript: NM_001282
Length: 2116
Transcript: NM_001282
Intron
Length: 8554
Transcript: NM_001282
Length: 8554
Transcript: NM_001282
Intron
Length: 6809
Transcript: NM_001282
Length: 6809
Transcript: NM_001282
Intron
Length: 13962
Transcript: NM_001282
Length: 13962
Transcript: NM_001282
Intron
Length: 2275
Transcript: NM_001282
Length: 2275
Transcript: NM_001282
Intron
Length: 8373
Transcript: NM_001282
Length: 8373
Transcript: NM_001282
Intron
Length: 26399
Transcript: NM_001282
Length: 26399
Transcript: NM_001282
Intron
Length: 925
Transcript: NM_001282
Length: 925
Transcript: NM_001282
Intron
Length: 6874
Transcript: NM_001282
Length: 6874
Transcript: NM_001282
Intron
Length: 6275
Transcript: NM_001282
Length: 6275
Transcript: NM_001282
Reaction
Expected peak: 196
64.9M
refseq_AP2B1.F1
refseq_AP2B1.R1
Expected peak: 196
64.9M
refseq_AP2B1.F1
refseq_AP2B1.R1
refseq_AP2B1.F1
TGTTGGCACTACCACTGCAA
TGTTGGCACTACCACTGCAA
refseq_AP2B1.R1
TGATGGGATGAAGGATTGTCC
TGATGGGATGAAGGATTGTCC