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Supplementary data
Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
2. Array-192 -- RBM10 Knockdowns in BJ-TIELF, MCF-7, MDA-MB-231, SKOV-3, and PC-3
Transcript map
: ARHGAP9 CTRL BJT exp38
Exon
Length: 161
Transcript: NM_001080156
Length: 161
Transcript: NM_001080156
Exon
Length: 222
Transcript: NM_001080156
Length: 222
Transcript: NM_001080156
Exon
Length: 114
Transcript: NM_001080156
Length: 114
Transcript: NM_001080156
Exon
Length: 93
Transcript: NM_001080156
Length: 93
Transcript: NM_001080156
Exon
Length: 62
Transcript: NM_001080156
Length: 62
Transcript: NM_001080156
Exon
Length: 91
Transcript: NM_001080156
Length: 91
Transcript: NM_001080156
Exon
Length: 96
Transcript: NM_001080156
Length: 96
Transcript: NM_001080156
Exon
Length: 99
Transcript: NM_001080156
Length: 99
Transcript: NM_001080156
Exon
Length: 133
Transcript: NM_001080156
Length: 133
Transcript: NM_001080156
Exon
Length: 108
Transcript: NM_001080156
Length: 108
Transcript: NM_001080156
Exon
Length: 99
Transcript: NM_001080156
Length: 99
Transcript: NM_001080156
Exon
Length: 78
Transcript: NM_001080156
Length: 78
Transcript: NM_001080156
Exon
Length: 54
Transcript: NM_001080156
Length: 54
Transcript: NM_001080156
Exon
Length: 135
Transcript: NM_001080156
Length: 135
Transcript: NM_001080156
Exon
Length: 106
Transcript: NM_001080156
Length: 106
Transcript: NM_001080156
Exon
Length: 434
Transcript: NM_001080156
Length: 434
Transcript: NM_001080156
Intron
Length: 104
Transcript: NM_001080156
Length: 104
Transcript: NM_001080156
Intron
Length: 189
Transcript: NM_001080156
Length: 189
Transcript: NM_001080156
Intron
Length: 192
Transcript: NM_001080156
Length: 192
Transcript: NM_001080156
Intron
Length: 219
Transcript: NM_001080156
Length: 219
Transcript: NM_001080156
Intron
Length: 135
Transcript: NM_001080156
Length: 135
Transcript: NM_001080156
Intron
Length: 197
Transcript: NM_001080156
Length: 197
Transcript: NM_001080156
Intron
Length: 139
Transcript: NM_001080156
Length: 139
Transcript: NM_001080156
Intron
Length: 217
Transcript: NM_001080156
Length: 217
Transcript: NM_001080156
Intron
Length: 84
Transcript: NM_001080156
Length: 84
Transcript: NM_001080156
Intron
Length: 317
Transcript: NM_001080156
Length: 317
Transcript: NM_001080156
Intron
Length: 171
Transcript: NM_001080156
Length: 171
Transcript: NM_001080156
Intron
Length: 149
Transcript: NM_001080156
Length: 149
Transcript: NM_001080156
Intron
Length: 246
Transcript: NM_001080156
Length: 246
Transcript: NM_001080156
Intron
Length: 333
Transcript: NM_001080156
Length: 333
Transcript: NM_001080156
Intron
Length: 914
Transcript: NM_001080156
Length: 914
Transcript: NM_001080156
Reaction
Expected peak: 401
1.7M
rs.ARHGAP9.F1
rs.ARHGAP9.R1
Expected peak: 401
1.7M
rs.ARHGAP9.F1
rs.ARHGAP9.R1
Exon
Length: 551
Transcript: NM_001080157
Length: 551
Transcript: NM_001080157
Exon
Length: 218
Transcript: NM_001080157
Length: 218
Transcript: NM_001080157
Exon
Length: 222
Transcript: NM_001080157
Length: 222
Transcript: NM_001080157
Exon
Length: 114
Transcript: NM_001080157
Length: 114
Transcript: NM_001080157
Exon
Length: 93
Transcript: NM_001080157
Length: 93
Transcript: NM_001080157
Exon
Length: 62
Transcript: NM_001080157
Length: 62
Transcript: NM_001080157
Exon
Length: 91
Transcript: NM_001080157
Length: 91
Transcript: NM_001080157
Exon
Length: 96
Transcript: NM_001080157
Length: 96
Transcript: NM_001080157
Exon
Length: 99
Transcript: NM_001080157
Length: 99
Transcript: NM_001080157
Exon
Length: 133
Transcript: NM_001080157
Length: 133
Transcript: NM_001080157
Exon
Length: 108
Transcript: NM_001080157
Length: 108
Transcript: NM_001080157
Exon
Length: 99
Transcript: NM_001080157
Length: 99
Transcript: NM_001080157
Exon
Length: 78
Transcript: NM_001080157
Length: 78
Transcript: NM_001080157
Exon
Length: 54
Transcript: NM_001080157
Length: 54
Transcript: NM_001080157
Exon
Length: 135
Transcript: NM_001080157
Length: 135
Transcript: NM_001080157
Exon
Length: 434
Transcript: NM_001080157
Length: 434
Transcript: NM_001080157
Intron
Length: 333
Transcript: NM_001080157
Length: 333
Transcript: NM_001080157
Intron
Length: 859
Transcript: NM_001080157
Length: 859
Transcript: NM_001080157
Intron
Length: 189
Transcript: NM_001080157
Length: 189
Transcript: NM_001080157
Intron
Length: 192
Transcript: NM_001080157
Length: 192
Transcript: NM_001080157
Intron
Length: 219
Transcript: NM_001080157
Length: 219
Transcript: NM_001080157
Intron
Length: 135
Transcript: NM_001080157
Length: 135
Transcript: NM_001080157
Intron
Length: 197
Transcript: NM_001080157
Length: 197
Transcript: NM_001080157
Intron
Length: 139
Transcript: NM_001080157
Length: 139
Transcript: NM_001080157
Intron
Length: 217
Transcript: NM_001080157
Length: 217
Transcript: NM_001080157
Intron
Length: 84
Transcript: NM_001080157
Length: 84
Transcript: NM_001080157
Intron
Length: 317
Transcript: NM_001080157
Length: 317
Transcript: NM_001080157
Intron
Length: 171
Transcript: NM_001080157
Length: 171
Transcript: NM_001080157
Intron
Length: 149
Transcript: NM_001080157
Length: 149
Transcript: NM_001080157
Intron
Length: 246
Transcript: NM_001080157
Length: 246
Transcript: NM_001080157
Intron
Length: 1353
Transcript: NM_001080157
Length: 1353
Transcript: NM_001080157
Reaction
Expected peak: 295
1M
rs.ARHGAP9.F1
rs.ARHGAP9.R1
Expected peak: 295
1M
rs.ARHGAP9.F1
rs.ARHGAP9.R1
Exon
Length: 121
Transcript: NM_032496
Length: 121
Transcript: NM_032496
Exon
Length: 334
Transcript: NM_032496
Length: 334
Transcript: NM_032496
Exon
Length: 218
Transcript: NM_032496
Length: 218
Transcript: NM_032496
Exon
Length: 222
Transcript: NM_032496
Length: 222
Transcript: NM_032496
Exon
Length: 114
Transcript: NM_032496
Length: 114
Transcript: NM_032496
Exon
Length: 93
Transcript: NM_032496
Length: 93
Transcript: NM_032496
Exon
Length: 62
Transcript: NM_032496
Length: 62
Transcript: NM_032496
Exon
Length: 91
Transcript: NM_032496
Length: 91
Transcript: NM_032496
Exon
Length: 96
Transcript: NM_032496
Length: 96
Transcript: NM_032496
Exon
Length: 99
Transcript: NM_032496
Length: 99
Transcript: NM_032496
Exon
Length: 133
Transcript: NM_032496
Length: 133
Transcript: NM_032496
Exon
Length: 108
Transcript: NM_032496
Length: 108
Transcript: NM_032496
Exon
Length: 99
Transcript: NM_032496
Length: 99
Transcript: NM_032496
Exon
Length: 78
Transcript: NM_032496
Length: 78
Transcript: NM_032496
Exon
Length: 54
Transcript: NM_032496
Length: 54
Transcript: NM_032496
Exon
Length: 135
Transcript: NM_032496
Length: 135
Transcript: NM_032496
Exon
Length: 106
Transcript: NM_032496
Length: 106
Transcript: NM_032496
Exon
Length: 434
Transcript: NM_032496
Length: 434
Transcript: NM_032496
Intron
Length: 305
Transcript: NM_032496
Length: 305
Transcript: NM_032496
Intron
Length: 333
Transcript: NM_032496
Length: 333
Transcript: NM_032496
Intron
Length: 859
Transcript: NM_032496
Length: 859
Transcript: NM_032496
Intron
Length: 189
Transcript: NM_032496
Length: 189
Transcript: NM_032496
Intron
Length: 192
Transcript: NM_032496
Length: 192
Transcript: NM_032496
Intron
Length: 219
Transcript: NM_032496
Length: 219
Transcript: NM_032496
Intron
Length: 135
Transcript: NM_032496
Length: 135
Transcript: NM_032496
Intron
Length: 197
Transcript: NM_032496
Length: 197
Transcript: NM_032496
Intron
Length: 139
Transcript: NM_032496
Length: 139
Transcript: NM_032496
Intron
Length: 217
Transcript: NM_032496
Length: 217
Transcript: NM_032496
Intron
Length: 84
Transcript: NM_032496
Length: 84
Transcript: NM_032496
Intron
Length: 317
Transcript: NM_032496
Length: 317
Transcript: NM_032496
Intron
Length: 171
Transcript: NM_032496
Length: 171
Transcript: NM_032496
Intron
Length: 149
Transcript: NM_032496
Length: 149
Transcript: NM_032496
Intron
Length: 246
Transcript: NM_032496
Length: 246
Transcript: NM_032496
Intron
Length: 333
Transcript: NM_032496
Length: 333
Transcript: NM_032496
Intron
Length: 914
Transcript: NM_032496
Length: 914
Transcript: NM_032496
Reaction
Expected peak: 401
1.7M
rs.ARHGAP9.F1
rs.ARHGAP9.R1
Expected peak: 401
1.7M
rs.ARHGAP9.F1
rs.ARHGAP9.R1
rs.ARHGAP9.R1
GCTGGTGAAGTTGGTGAGCATC
GCTGGTGAAGTTGGTGAGCATC
rs.ARHGAP9.F1
AAGGTCGGTTAGATTTGGACAGT
AAGGTCGGTTAGATTTGGACAGT