2. Breast Validation Screen - Rnomics 📊 Palace

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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/493593

2. Breast Validation Screen ⚙

Transcript map : HSD17B1

Exon
Length: 3817
Transcript: HSD17B1.aAug05

Exon
Length: 168
Transcript: HSD17B1.aAug05

Exon
Length: 180
Transcript: HSD17B1.aAug05

Exon
Length: 94
Transcript: HSD17B1.aAug05

Exon
Length: 178
Transcript: HSD17B1.aAug05

Exon
Length: 547
Transcript: HSD17B1.aAug05

Intron
Length: 93
Transcript: HSD17B1.aAug05

Intron
Length: 147
Transcript: HSD17B1.aAug05

Intron
Length: 175
Transcript: HSD17B1.aAug05

Intron
Length: 517
Transcript: HSD17B1.aAug05

Intron
Length: 86
Transcript: HSD17B1.aAug05

Reaction
Expected peak: 307
Associated peak: 318,319,320,321,322,323,324
Repeated 51 time
Molarity: 6.28M
Forward: HSD17B1.F4
Reverse: HSD17B1.R4

Reaction
Expected peak: 325
Associated peak: 344,346,347,348,349,350,351,352,353
Repeated 51 time
Molarity: 4.07M
Forward: HSD17B1.F3
Reverse: HSD17B1.R3

Exon
Length: 98
Transcript: HSD17B1.bAug05

Exon
Length: 168
Transcript: HSD17B1.bAug05

Exon
Length: 180
Transcript: HSD17B1.bAug05

Exon
Length: 94
Transcript: HSD17B1.bAug05

Exon
Length: 181
Transcript: HSD17B1.bAug05

Exon
Length: 516
Transcript: HSD17B1.bAug05

Intron
Length: 93
Transcript: HSD17B1.bAug05

Intron
Length: 147
Transcript: HSD17B1.bAug05

Intron
Length: 175
Transcript: HSD17B1.bAug05

Intron
Length: 514
Transcript: HSD17B1.bAug05

Intron
Length: 86
Transcript: HSD17B1.bAug05

Reaction
Expected peak: 310
Associated peak: 318,319,320,321,322,323,324
Repeated 51 time
Molarity: 6.28M
Forward: HSD17B1.F4
Reverse: HSD17B1.R4

Reaction
Expected peak: 328
Associated peak: 344,346,347,348,349,350,351,352,353
Repeated 51 time
Molarity: 4.07M
Forward: HSD17B1.F3
Reverse: HSD17B1.R3

Exon
Length: 435
Transcript: HSD17B1.cAug05

Exon
Length: 521
Transcript: HSD17B1.cAug05

Intron
Length: 86
Transcript: HSD17B1.cAug05

Reaction
Expected peak: 999
Associated peak: 905,963,967,974,977,981,984,989,992,995,1000,1011
Repeated 51 time
Molarity: 2.12M
Forward: HSD17B1.F4
Reverse: HSD17B1.R4

Reaction
Expected peak: 1017
Associated peak: 995,997,1014,1016,1018,1024,1026
Repeated 51 time
Molarity: 0.65M
Forward: HSD17B1.F3
Reverse: HSD17B1.R3

Exon
Length: 370
Transcript: HSD17B1.dAug05

Exon
Length: 449
Transcript: HSD17B1.dAug05

Exon
Length: 178
Transcript: HSD17B1.dAug05

Exon
Length: 377
Transcript: HSD17B1.dAug05

Intron
Length: 147
Transcript: HSD17B1.dAug05

Intron
Length: 517
Transcript: HSD17B1.dAug05

Intron
Length: 86
Transcript: HSD17B1.dAug05

Reaction
Expected peak: 482
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: HSD17B1.F4
Reverse: HSD17B1.R4

Reaction
Expected peak: 500
Associated peak: 470,472,478,480,482,484,486
Repeated 51 time
Molarity: 0.15M
Forward: HSD17B1.F3
Reverse: HSD17B1.R3

Exon
Length: 108
Transcript: HSD17B1.eAug05

Exon
Length: 168
Transcript: HSD17B1.eAug05

Exon
Length: 700
Transcript: HSD17B1.eAug05

Intron
Length: 93
Transcript: HSD17B1.eAug05

Intron
Length: 147
Transcript: HSD17B1.eAug05

Reaction
Expected peak: 999
Associated peak: 905,963,967,974,977,981,984,989,992,995,1000,1011
Repeated 51 time
Molarity: 2.12M
Forward: HSD17B1.F4
Reverse: HSD17B1.R4

Reaction
Expected peak: 1017
Associated peak: 995,997,1014,1016,1018,1024,1026
Repeated 51 time
Molarity: 0.65M
Forward: HSD17B1.F3
Reverse: HSD17B1.R3

Exon
Length: 106
Transcript: HSD17B1.fAug05

Exon
Length: 168
Transcript: HSD17B1.fAug05

Exon
Length: 180
Transcript: HSD17B1.fAug05

Exon
Length: 35
Transcript: HSD17B1.fAug05

Intron
Length: 93
Transcript: HSD17B1.fAug05

Intron
Length: 147
Transcript: HSD17B1.fAug05

Intron
Length: 786
Transcript: HSD17B1.fAug05

Reaction
Expected peak: 213
Associated peak: 229,230,231,232,233,240
Repeated 51 time
Molarity: 3.97M
Forward: HSD17B1.F4
Reverse: HSD17B1.R4

Reaction
Expected peak: 231
Associated peak: 249,250,251,252,253
Repeated 51 time
Molarity: 2.31M
Forward: HSD17B1.F3
Reverse: HSD17B1.R3

Exon
Length: 60
Transcript: HSD17B1.gAug05

Exon
Length: 932
Transcript: HSD17B1.gAug05

Intron
Length: 93
Transcript: HSD17B1.gAug05

Reaction
Expected peak: 999
Associated peak: 905,963,967,974,977,981,984,989,992,995,1000,1011
Repeated 51 time
Molarity: 2.12M
Forward: HSD17B1.F4
Reverse: HSD17B1.R4

Reaction
Expected peak: 1017
Associated peak: 995,997,1014,1016,1018,1024,1026
Repeated 51 time
Molarity: 0.65M
Forward: HSD17B1.F3
Reverse: HSD17B1.R3

Exon
Length: 2856
Transcript: HSD17B1.shed1.aAug05

Reaction
Expected peak: 999
Associated peak: 905,963,967,974,977,981,984,989,992,995,1000,1011
Repeated 51 time
Molarity: 2.12M
Forward: HSD17B1.F4
Reverse: HSD17B1.R4

Reaction
Expected peak: 1017
Associated peak: 995,997,1014,1016,1018,1024,1026
Repeated 51 time
Molarity: 0.65M
Forward: HSD17B1.F3
Reverse: HSD17B1.R3

HSD17B1.F4
CTTCCTGCCAGACATGAAGAG

HSD17B1.F3
TGCTGGACGTGAATGTAGTAGG

HSD17B1.R4
AAAGACTTGCTTGCTGTGGG

HSD17B1.R3
TATTGGTAGAAGCGGTGGAAGG

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
HSD17B1.F3	HSD17B1.R3	51	View
HSD17B1.F4	HSD17B1.R4	51	View

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